systems biology

Large-scale inference of competing endogenous RNA networks with sparse partial correlation

*Motivation*MicroRNAs (miRNAs) are important non-coding post-transcriptional regulators that are involved in many biological processes and human diseases. Individual miRNAs may regulate hundreds of genes, giving rise to a complex gene regulatory …


An R shiny app to mine the Arabidopsis THaliana ExpressioN Atlas across plant tissues.


An R shiny web application for the analysis of various types of high-throughput screening data.

De novo pathway-based biomarker identification

Gene expression profiles have been extensively discussed as anaid to guide the therapy by predicting disease outcome for thepatients suffering from complex diseases, such as cancer.However, prediction models built upon single-gene (SG) featuresshow …

Comprehensive analysis of high-throughput screens with HiTSeekR