network analysis

Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research

SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) is a novel virus of the family Coronaviridae. The virus causes the infectious disease COVID-19. The biology of coronaviruses has been studied for many years. However, bioinformatics tools …

Mechanistic Modeling and Multiscale Applications for Precision Medicine: Theory and Practice

Drug research, therapy development, and other areas of pharmacology and medicine can benefit from simulations and optimization of mathematical models that contain a mathematical description of interactions between systems elements at the cellular, …

CoVex

A web app for mining the Sars-COV-1/2 virus-host-drug interactome for drug repurposing candidates.

Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing

Coronavirus Disease-2019 (COVID-19) is an infectious disease caused by the SARS-CoV-2 virus. It was first identified in Wuhan, China, and has since spread causing a global pandemic. Various studies have been performed to understand the molecular …

BiCoN

A python package and web application for network-constrained biclustering for patient stratification.

SPONGE

A bioconductor package for inferring genome-wide networks of competing endogenous RNAs.

KPM

A web app for *de novo* network enrichment, i.e. to integrate multi-omics data with the interactome.

Athena

An R shiny app to mine the Arabidopsis THaliana ExpressioN Atlas across plant tissues.

HiTSeekR

An R shiny web application for the analysis of various types of high-throughput screening data.

JAMI

A fast Java tool for conditional mutual information in ceRNA inference and beyond.