Publications

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(2019). CFP suppresses breast cancer cell growth by TES-mediated upregulation of the transcription factor DDIT3. Oncogene.

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(2018). Comprehensive evaluation of cell-type quantification methods for immuno-oncology. bioRxiv preprint.

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(2018). An ontology-based method for assessing batch effect adjustmentapproaches in heterogeneous datasets. Bioinformatics (ECCB 2018 conference proceedings).

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(2018). MiRNA-181d Expression Significantly Affects Treatment Responsesto Carmustine Wafer Implantation. Neurosurgery.

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(2018). JAMI - Fast computation of Conditional Mutual Information forceRNA network analysis. Bioinformatics.

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(2017). The long non-coding RNA H19 suppresses carcinogenesis and chemoresistance in hepatocellular carcinoma. Cell Stress.

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(2017). De novo pathway-based biomarker identification. Nucleic Acids Res..

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(2017). Interactive microbial distribution analysis using BioAtlas. Nucleic Acids Res..

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(2017). Systematic screening of isogenic cancer cells identifies DUSP6 as context-specific synthetic lethal target in melanoma. Oncotarget.

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(2017). Ten Simple Rules for Developing Usable Software in Computational Biology. PLoS Comput. Biol..

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(2017). Protein-based nanotoxicology assessment strategy. Nanomedicine.

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(2017). On the performance of de novo pathway enrichment. npj Systems Biology and Applications.

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(2017). DeepBlueR: large-scale epigenomic analysis in R. Bioinformatics.

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(2016). Efficient Management of High-Throughput Screening Libraries with SAVANAH. J. Biomol. Screen..

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(2016). Comprehensive analysis of high-throughput screens with HiTSeekR. Nucleic Acids Res..

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(2016). DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region sets. Nucleic Acids Res..

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(2016). Robust de novo pathway enrichment with KeyPathwayMiner 5. F1000Res..

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(2016). KeyPathwayMinerWeb: online multi-omics network enrichment. Nucleic Acids Res..

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(2015). OpenLabNotes - An Electronic Laboratory Notebook Extension for OpenLabFramework. J. Integr. Bioinform..

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(2014). Microarray R-based analysis of complex lysate experiments with MIRACLE. Bioinformatics.

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(2014). Efficient Sample Tracking With OpenLabFramework. Sci. Rep..

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(2014). Classification of Breast Cancer Subtypes by combining GeneExpression and DNA Methylation Data. J. Integr. Bioinform..

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(2014). Classification of Breast Cancer Subtypes by combining GeneExpression and DNA Methylation Data. J. Integr. Bioinform..

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