Jan Baumbach | Big Data in Biomedicine

Latest

A Systematic Comparison of Differential Analysis Methods for CyTOF Data
Platelet Surface Protein Expression and Reactivity upon TRAP Stimulation after BNT162b2 Vaccination
Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases
Network analysis methods for studying microbial communities: A mini review
Clinical epigenetics settings for cancer and cardiovascular diseases: real-life applications of network medicine at the bedside
On the limits of active module identification
Machine learning for deciphering cell heterogeneity and gene regulation
On the Consistency between Gene Expression and the Gene Regulatory Network of Corynebacterium glutamicum
ASimulatoR: splice-aware RNA-Seq data simulation
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
SPONGEdb: a pan-cancer resource for competing endogenous RNA interactions
SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype
BiCoN: Network-constrained biclustering of patients and omics data
A framework for modeling epistatic interaction
Flimma: a federated and privacy-preserving tool for differential gene expression analysis
Federated Multi-Mini-Batch: An Efficient Training Approach to Federated Learning in Non-IID Environments
Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research
BALSAM—An Interactive Online Platform for Breath Analysis, Visualization and Classification
DIGGER: exploring the functional role of alternative splicing in protein interactions
PTPN2 Deficiency Enhances Programmed T Cell Expansion and Survival Capacity of Activated T Cells
sPLINK: A Federated, Privacy-Preserving Tool as a Robust Alternative to Meta-Analysis in Genome-Wide Association Studies
Multi-Omics Analysis in a Network Context (in "Reference Module in Biomedical Sciences")
Mechanistic Modeling and Multiscale Applications for Precision Medicine: Theory and Practice
EpiGEN: an epistasis simulation pipeline
BioAtlas verbindet Mikrobiomsequenzdaten und GEO-Informationen
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
De novo pathway-based biomarker identification
On the performance of de novo pathway enrichment
Efficient Management of High-Throughput Screening Libraries with SAVANAH
Comprehensive analysis of high-throughput screens with HiTSeekR
KeyPathwayMinerWeb: online multi-omics network enrichment
Robust de novo pathway enrichment with KeyPathwayMiner 5
OpenLabNotes - An Electronic Laboratory Notebook Extension for OpenLabFramework
Microarray R-based analysis of complex lysate experiments with MIRACLE
Efficient Sample Tracking With OpenLabFramework
Classification of Breast Cancer Subtypes by combining GeneExpression and DNA Methylation Data