Jan Baumbach

Latest

• Clinical epigenetics settings for cancer and cardiovascular diseases: real-life applications of network medicine at the bedside
• On the limits of active module identification
• Machine learning for deciphering cell heterogeneity and gene regulation
• On the Consistency between Gene Expression and the Gene Regulatory Network of Corynebacterium glutamicum
• ASimulatoR: splice-aware RNA-Seq data simulation
• Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
• SPONGEdb: a pan-cancer resource for competing endogenous RNA interactions
• SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype
• BiCoN: Network-constrained biclustering of patients and omics data
• A framework for modeling epistatic interaction
• Flimma: a federated and privacy-preserving tool for differential gene expression analysis
• Federated Multi-Mini-Batch: An Efficient Training Approach to Federated Learning in Non-IID Environments
• Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research
• BALSAM—An Interactive Online Platform for Breath Analysis, Visualization and Classification
• DIGGER: exploring the functional role of alternative splicing in protein interactions
• PTPN2 Deficiency Enhances Programmed T Cell Expansion and Survival Capacity of Activated T Cells
• sPLINK: A Federated, Privacy-Preserving Tool as a Robust Alternative to Meta-Analysis in Genome-Wide Association Studies
• Multi-Omics Analysis in a Network Context (in "Reference Module in Biomedical Sciences")
• Mechanistic Modeling and Multiscale Applications for Precision Medicine: Theory and Practice
• EpiGEN: an epistasis simulation pipeline
• BioAtlas verbindet Mikrobiomsequenzdaten und GEO-Informationen
• Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
• De novo pathway-based biomarker identification
• On the performance of de novo pathway enrichment
• Efficient Management of High-Throughput Screening Libraries with SAVANAH
• Comprehensive analysis of high-throughput screens with HiTSeekR
• KeyPathwayMinerWeb: online multi-omics network enrichment
• Robust de novo pathway enrichment with KeyPathwayMiner 5
• OpenLabNotes - An Electronic Laboratory Notebook Extension for OpenLabFramework
• Microarray R-based analysis of complex lysate experiments with MIRACLE
• Efficient Sample Tracking With OpenLabFramework
• Classification of Breast Cancer Subtypes by combining GeneExpression and DNA Methylation Data