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Nico Trummer

Student Research Assistant

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Judith Bernett

Student Research Assistant

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Markus Hoffmann

PhD Student

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Michael Lauber

PhD Student

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Manuela Lautizi

PhD Student

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Quirin Manz

Student Research Assistant

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Monica Matchado

PhD Student

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Alexander Dietrich

PhD student

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Johannes Kersting

Student Research Assistant

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Tim Faro

Student Research Assistant

BSc and MSc Students

Leon Schwartz

Bachelor student

Jennifer Fischer

Bachelor student

Kushagra Agarwal

Student Intern

Leon Hafner

Bachelor student

Franc Hysenaj

Bachelor student

Sylvie Baier

Student Intern

Vivienne Nahrstedt

Bachelor student

Carina Hui Schröder

BSc Student

Maxim Ustinov

BSc Student

Julian Poschenrieder

Student Intern

Korbinian Pürckhauer

BSc Student

Evelyn Scheibling

MSc student

Alumni

Akshit Achara

MSc Student

Klaudia Adamowicz

MSc Student

Lis Arend

Student Research Assistant

Thibault Bechtler

BSc Student

David Blumenthal

Post-Doc

Florian Bößl

BSc Student

Fabio Boniolo

PhD Student

Rahel Caspar

BSc Student

Aparna Chauhan

Internship

Octavia-Andreea Ciora

MSc Student

Amit Fenn

PhD Student

Lena Hackl

MSc Student

Anne Hartebrodt

MScStudents

Michael Hartung

MSc Student

Quirin Heiß

MSc Student

Valentin Hildemann

BSc Student

Miriam Hilger

BSc Student

Patrick Hoffmann

BSc Student

Melissa Klug

PhD Student

Rafael Lago

BSc Student

Olga Lazareva

PhD Student

Chit Tong Lio

PhD Student

Zakaria Louadi

PhD Student

Laura Marsoner

Student Research Assistant

Thomas Mauermeier

BSc Student

Michaela Müller

Student Intern

Konstantin Pelz

Student Intern

Sara-Luisa Reh

BSc Student

Leonora Raka

BSc Student

Rafaela Relota

BSc Student

Christopher Rieß

BSc Student

Fanny Rößler

Student Research Assistant

Laura Hernández Lorenzo

Visiting PhD Student

Anna Schuster

BSc Student

Gregor Sturm

MSc Student

Olga Tsoy

Post-Doc

Kevin Yuan

Student Research Assistant

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Recent Publications

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Recent & Upcoming Talks

The field of systems medicine aims to develop mechanistic disease definitions and to identify groups of patients that would benefit …

Protein-protein interaction networks have been used since the early days of systems biology to model functional relationships between …

Modern medicine suffers from a conceptual crisis: diseases are defined and diagnosed based on symptoms (e.g., hypertension, depression) …

Software Tools

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CYANUS

R shiny app for the analysis of cytometry data with a focus on differential analysis.

namco

An R shiny app for the end-to-end analysis of 16S rRNA microbiome data.

DIGGER

Analyze protein-protein and domain-domain interactions in a joint graph.

NEASE

Network-based functional enrichment of alternative splicing.

CoVex

Drug repurposing on the Sars-CoV2 virus-host-drug interactome.

ASimulatoR

A simulator for RNA-seq data with alternative splicing events written in R.

EpiGEN

An easy-to-use Python pipeline for simulating epistasis data.

BiCoN

Network-constrained biclustering for patient stratification.

immunedeconv

A unifying package for in silico cell type deconvolution in immuno-oncology.

WSH

Computing within-sample heterogeneity scores from bisulfte sequencing data.

HouseKeepR

Mining GEO for tissue- and condition-specific normalization genes.

SPONGE

Inferring genome-wide networks of competing endogenous RNAs.

SPONGE

A pancancer database on competing endogenous RNA regulations.

KPM

de novo network enrichment to integrate multi-omics data with the interactome.

Athena

Mine the Arabidopsis THaliana ExpressioN Atlas across plant tissues.

BioAtlas

Process amplicon data and study microbial diversity across the globe.

DeepBlueR

A bioconductor package for accessing the DeepBlue epigenome analysis web server.

HiTSeekR

Analyse various types of high-throughput screening data.

JAMI

A fast Java tool for conditional mutual information in ceRNA inference.

MIRACLE

A web app for sample logistics and data analysis of reverse-phase protein arrays.

SAVANAH

A web app for sample logistics and visual inspection of high-throughput experiments.

OpenLabFramework

A laboratory information management system for functional genomics.

Projects

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REPO4EU is a euro-global platform for mechanism-based drug repurposing through real-world data and artificial intelligence covering every step from lab to phase II clinical.

The DFG-funded Collaborative Research Center 1371 for Microbiome Signatures investigates the functional relevance of the microbiome in the digestive tract.

Sys_CARE is a BMBF-funded collaborative research project to elucidate the role of alternative splicing in cardiac and renal diseases using systems medicine approaches and molecular big data.

Teaching

Bachelor / Master thesis projects

You can find a list of currently open topics in our group here

WS 2021 / 2022

  • Systems BioMedicine (registration via TUM online)
  • Introduction to Bioinformatics I (registration via TUM online)
  • Journal Club Bioinformatics (GZW)
  • Advanced lab courses (Master)

SS 2021

  • Introduction to Bioinformatics II
  • Advanced Bioinformatics
  • Master practical course (click here for project details)
  • Journal Club Bioinformatics (GZW)
  • Basic Introduction to R (GZW)
  • Basic Introduction to Python (GZW)

WS 2020 / 2021

  • Systems BioMedicine
  • Introduction to Bioinformatics I
  • Journal Club Bioinformatics
  • Basics in Bioinformatics (GZW)
  • Basic Introduction to R for Bioinformatics (GZW)
  • Advanced lab courses (Master)

SS 2020

  • Advanced Bioinformatics
  • Introduction to Bioinformatics II
  • Master practical course
  • Journal Club Bioinformatics

WS 2019 / 2020

  • Systems BioMedicine
  • Introduction to Bioinformatik I
  • Journal Club Bioinformatics
  • Basics in Bioinformatics (CRC1371)
  • Computational Systems Medicine (CRC1371)
  • Basic Introduction to R for Bioinformatics (CRC1321)
  • Basic Introduction to R for Bioinformatics (CRC1371)

SS 2018

  • Advanced Bioinformatics
  • Introduction to Bioinformatics II
  • Master practical course
  • Journal Club Bioinformatics

WS 2018/2019

  • Introduction to Bioinformatik I
  • Journal Club Bioinformatics

SS 2018

  • Introduction to Bioinformatics II

Thesis topics

We have no shortage in exciting and topics for talented Bachelor and Master students that seek a challenge. Contact us and let us know about your interests.

Further information

A short description, dates, and rooms for these lectures and courses can be found at https://www.exbio.de/teaching. More details are available at https://www.in.tum.de/fuer-studierende/bachelor-studiengaenge/bioinformatik/pruefungsordnung-modulkatalog/fpso-2017/ (Bachelor) and https://www.in.tum.de/fuer-studierende/master-studiengaenge/bioinformatik/pruefungsordnung-modulkatalog/fpso-2016/ (Master).

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